What is mixing time in Noesy?

What is mixing time in Noesy?

Mixing times The following are guidelines: 1) small molecules :0.5 -1 or more seconds. Start with 0.5 sec. 2) medium size molecules 0.1 -0.8 sec.

What is Noesy used for?

Nuclear Overhauser Effect Spectroscopy (NOESY) is a 2D NMR spectroscopic method used to identify nuclear spins undergoing cross-relaxation and to measure their cross-relaxation rates.

Is Hmqc the same as HSQC?

Heteronuclear multiple quantum coherence (HMQC) is also known as heteronuclear single quantum correlation (HSQC).

How does HSQC work?

HSQC works by transferring magnetization from the I nucleus (usually the proton) to the S nucleus (usually the heteroatom) using the INEPT pulse sequence; this first step is done because the proton has a greater equilibrium magnetization and thus this step creates a stronger signal.

What is Noesy spectrum?

Nuclear Overhauser Effect Spectroscopy, or NOESY, shows through-space interactions within the molecule, rather than the through-bond interactions seen in the other methods. This method is especially useful for determining stereochemical relationships in a molecule.

What is 2D Noesy?

2D NOESY: The NOESY experiment is crucial for the determination of protein structure. It uses the dipolar interaction of spins (the nuclear Overhauser effect, NOE) for correlation of protons. It also correlates protons which are distant in the amino acid sequence but close in space due to tertiary structure.

How do you read one direction’s Noesy?

1D NOESY spectra of small molecules are displayed with the large excited peak phased negative and the NOE peaks phased positive. NOE peaks are weak – typically less than 2% of the intensity of the excited peak, often as little as 0.01%.

What is the default mix time for Roesy and NOESY?

The default NOESY mix time is mixN=0.8 seconds, optimal for small molecules. For less than optimal situations (i.e. larger molecule, more viscous sample, faster relaxation from other sources) you can set mixN=0.2 -0.6 seconds. The default ROESY mix time is mixR=0.2 seconds.

How do I change the NOESY mix time?

Mix time can be changed using mix, mixN or mixR. The default NOESY mix time is mixN=0.8 seconds, optimal for small molecules. For less than optimal situations (i.e. larger molecule, more viscous sample, faster relaxation from other sources) you can set mixN=0.2 -0.6 seconds.

What is the difference between nonoesy and ROESY?

NOESY gives positive peaks for small molecules (opposite of diagonal) and negative peaks for macromolecules. For mid-sized molecules (MW ~1000-3000) nOe’s can approach zero and the more demanding ROESY experiment must be used, which always gives positive nOe peaks.

What is the difference between a Rosey and a NOESY experiment?

For example, if you have rotamers that are in slow exchange with one another on the NMR timescale, like restricted rotation about an amide bond, using a ROSEY experiment you’ll see an EXSY cross peak between the -NH protons, as well as any ROEs between protons in the molecule. A NOESY experiment would only give you the NOE crosspeaks.