What is Biobase R?
What is Biobase R?
Biobase is an R/Bioconductor package that implements base functions for Bioconductor. See https://bioconductor.org/packages/Biobase for more information including how to install the release version of the package (please refrain from installing directly from GitHub).
Is Bioconductor free?
Bioconductor is a free, open source and open development software project for the analysis and comprehension of genomic data generated by wet lab experiments in molecular biology. The use of these packages provides a basic understanding of the R programming / command language.
How do you remove a Bioconductor?
Remove a package with remove. packages() e.g. Affycoretools is a Bioconductor pacakge, so reinstallation needs their install script / the BiocInstaller package e.g. Go to the Packages in right bottom corner of Rstudio, sear the package name and click on the adjacent X icon to remove it.
How do I install R tools?
Go to https://cran.r-project.org/, click on ‘Download R for Windows’, then ‘Rtools’, and select the very latest version of RTools to download. After downloading has completed run the installer. Select the default options everywhere.
What can you do with Bioconductor?
Bioconductor provides access to powerful statistical and graphical methods for the analysis of genomic data. It also facilitates the integration of biological metadata like GenBank, GO, LocusLink and PubMed in the analysis of experimental data.
Where are R packages installed?
R packages are installed in a directory called library. The R function . libPaths() can be used to get the path to the library.
How do I install the Bioconductor package in R?
Maintainer: Bioconductor Package Maintainer Citation (from within R, enter citation (“Biobase”) ): To install this package, start R (version “4.1”) and enter: For older versions of R, please refer to the appropriate Bioconductor release .
How do I view documentation for the version of BIOBASE in R?
Citation (from within R, enter citation (“Biobase”) ): To view documentation for the version of this package installed in your system, start R and enter: Follow Installation instructions to use this package in your R session.
What version of Bioconductor is this package for?
This package is for version 2.10 of Bioconductor; for the stable, up-to-date release version, see Biobase. Bioconductor version: 2.10 Functions that are needed by many other packages or which replace R functions.
